Essential Bioinformatics for Global LeadersⅡ 2018年4月11日開講(教室の変更有) 

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4月11日より、Essential Bioinformatics for Global LeadersⅡを開講します。この科目はグローバル理工学副専攻の履修科目になっていますが、博士前期・後期課程に所属し、関心のある学生であれば、どなたでも履修することができます。なお、講義は英語で行われます。

主題と目標

Prof. GouraudBioinformatics is an interdisciplinary research area at the interface between biological science and computational science, the ultimate goal of which is to better understand living cells and their functioning at the molecular level. It involves the technologies that use computers for the storage, retrieval, manipulation, understanding and distribution of information related to biological macromolecules such as DNA, RNA, protein, and even more. To take benefit of these classes, it is recommended either to have a basic knowledge in molecular and cell biology or to have attended Essential Bioinformatics for Global Leaders I. These advanced classes aim at demonstrating the students how to apply computational methods to the analysis of big data obtained from high throughput techniques in the biological field. This course will give the students examples of common use of bioinformatics in the biological field and provide them with a practical experience with wet lab (microarray) and computer practice (data analysis) sessions.

学生へのメッセージ

This class will be a great opportunity for you to know everything about various useful bioinformatics applications among them, microarray technique. You will be especially given the opportunity to follow a real microarray experiment from beginning to end (wet lab and computational data analysis practice). Do not hesitate to join us in this fun experience!

講義概要

科目名
Essential Bioinformatics for Global LeadersⅡ [18S1010
単位数
2.0単位
担当教員
Gouraud, Sabine (お茶の水女子大学プロジェクト教育研究院特任准教授)
対象
博士前期・後期課程
日時・場所
4/11(水)5~6限(13:20-14:50)人間文化研究科棟408室
4/18(水)5~6限(13:20-14:50)人間文化研究科棟408室
4/25(水)5~6限(13:20-14:50)人間文化研究科棟408室
5/ 9(水)5~6限(13:20-14:50)人間文化研究科棟408室
5/16(水)5~8限(13:20-16:30)理学部2号館202室
5/23(水)5~6限(13:20-14:50)人間文化研究科棟408室
5/30(水)5~6限(13:20-14:50)人間文化研究科棟408室
6/ 6(水)5~6限(13:20-14:50)人間文化研究科棟408室
6/13(水)5~6限(13:20-14:50)人間文化研究科棟408室
6/20(水)5~6限(13:20-14:50)人間文化研究科棟408室
6/27(水)5~6限(13:20-14:50)人間文化研究科棟408室
7/ 4(水)5~6限(13:20-14:50)人間文化研究科棟408室
7/11(水)5~6限(13:20-14:50)人間文化研究科棟102室
7/18(水)5~6限(13:20-14:50)人間文化研究科棟102室
授業計画
  • Class 1- Introduction to the “omics” [style: lecture and discussion]
  • Class 2- Functional genomic databases and big data handling: Gene Ontology classification, KEGG, GEO… [style: lecture, computer practice and discussion]
  • Class 3- Proteomics techniques and applications [style: lecture and discussion]
  • Class 4- Genomics techniques and applications [style: lecture and discussion]
  • Class 5-6- Microarray experiment demonstration [style: wet lab]
  • Class 7- Microarray data visualization and retrieval [style: computer practice and discussion]
  • Class 8- Microarray data preprocessing [style: computer practice and discussion]
  • Class 9- Microarray data analysis and mining I [style: computer practice and discussion]
  • Class 10- Microarray data analysis and mining II [style: computer practice and discussion]
  • Class 11- Microarray data analysis: conclusion [style: computer practice and discussion]
  • Class 12**– Introduction to data and data types in the bioinformatics domain. Techniques for extracting information from various types of data. [Style: Lecture and computer demonstration]
  • Class 13**– An algorithm for information extraction from cellular imaging data [Style: computer practice]
  • Class 14**– Basic machine learning (ML) concept and theories, Simple ML algorithms for classification problems. [Style: Lecture and discussion]
  • Class 15**– A ML algorithm for disease classification [Style: Computer Practice]
  • **Courses given by Prof. Bashar MD Khayrul.
時間外学習
Students might be asked to perform simple data analysis to practice the methods seen during the class
教科書・参考文献
Various softwares and databases (Subioplatform, MeV, DAVID, Pathway Studio, Genespring, GEO, Matlab…)

履修登録

履修登録期間: 4月9日(月)~ 4月21日(土)
上記登録期間内に登録ができなかった場合は、学生センター棟1階学務課にご相談ください。

お問合せ

お茶の水女子大学 リーディング大学院推進センター
Tel: 03-5978-5775
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